PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC24680_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 174aa MW: 19482.5 Da PI: 10.2807

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC24680_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	4	20	1	17
CHHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriN 17 +r++h ++Er+RR+++N RrC24680_p1 4 QRMTHIAVERNRRRQMN 20 79**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-7	3	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
METQRMTHIA VERNRRRQMN GDQASIVGGA IDFLKILEQH LQSLEAQKMT QQTSKLRIDA 60 TVVERHVNLK IQCCQRKQGQ LLRSIILLEK RGFTVLHLSI TSPCSTSVSY SFNLKPQDRL 120 YVGHVSTILI GKPKTSGRKI ARNVLTKATE VEASATAESD TTELPEIVKT AQEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	4	15	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB678434	5e-34	AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds.
GenBank	AC005310	5e-34	AC005310.3 Arabidopsis thaliana chromosome 2 clone F19D11 map CIC06C03, complete sequence.
GenBank	AF488602	5e-34	AF488602.1 Arabidopsis thaliana clone bHLH070 putative bHLH transcription factor mRNA, partial sequence.
GenBank	CP002685	5e-34	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478268.1	5e-68	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH70-like
Refseq	XP_018478290.1	5e-68	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH70-like
Refseq	XP_018483142.1	5e-68	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH70-like
Swissprot	O81037	1e-52	BH070_ARATH; Transcription factor bHLH70
TrEMBL	A0A397ZWE7	3e-61	A0A397ZWE7_BRACM; Uncharacterized protein
STRING	Bo4g197360.1	1e-61	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	2e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]