PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24803_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 62aa    MW: 7413.38 Da    PI: 11.9062
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24803_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.5e-09234307339
         GRAS 307 erhetlekWrerleeaGFkpvplsekaakqakl 339
                  erhetl +Wr+r ++aGF pv+l+++a kqa +
  RrC24803_p1   2 ERHETLDQWRKRTGSAGFDPVNLGSDAFKQALA 34 
                  8*****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.591149IPR005202Transcription factor GRAS
PfamPF035148.8E-7234IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MERHETLDQW RKRTGSAGFD PVNLGSDAFK QALAIGPIWQ RRWIQSRGKR RESYARVAEW  60
RR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.17e-16RGA-like protein 3