PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2482_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 287aa    MW: 32752.5 Da    PI: 6.9143
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2482_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.62.4e-1127681046
                HHHHHH.....HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF 10 qvtfsk.....RrngilKKAeELSvLCdaevaviifsstgkl 46
                q+ f k     R +++lKKA EL vLCd e++v+ +  +g+l
  RrC2482_p5 27 QTRFKKpfllaREKTMLKKALELTVLCDNEICVLHYDRDGNL 68
                555544444449*************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00471474IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-1231109IPR002100Transcription factor, MADS-box
PfamPF003191.2E-63869IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.5873875IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MVSFSSSSSS DSSTKTKKNK FSVRNNQTRF KKPFLLAREK TMLKKALELT VLCDNEICVL  60
HYDRDGNLVS TMPEDQSQVT DILDKYRNLS DGEKLKKSTN LSQFYNKKLV DEKKRSLTDA  120
EERKRFTKKV GEFKGSLLDQ FHMLKDRVRD LRYSQDHHHQ TVQDQSPFLD VTPQENHNFP  180
EASSYGFFPA NAFSSSLIEE ENPLMMNFIP HDLDQQESFT NLLMSGDHVS TITDQYLPSP  240
ASSSAVCSSN HHQGKFSVFL FNHETSTFTQ LPNSASSSFD QGLIGTY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438138.10.0PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A3P6G4R61e-128A0A3P6G4R6_BRAOL; Uncharacterized protein
STRINGBo6g015480.11e-128(Brassica oleracea)
STRINGBo6g015500.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.15e-30AGAMOUS-like 53