PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24831_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 63aa    MW: 7093 Da    PI: 4.3905
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24831_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.77.5e-131043136
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevike 36
                 lppGfrFhP+deelv++yL++k+++k+l+++  +++
  RrC24831_p1 10 LPPGFRFHPSDEELVCHYLCNKIRAKSLHCN--VED 43
                 79*************************7762..222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-12842IPR003441NAC domain
PROSITE profilePS5100513.4211063IPR003441NAC domain
PfamPF023653.5E-81135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MGLKDIGSTL PPGFRFHPSD EELVCHYLCN KIRAKSLHCN VEDDDVDEAL KDATDLVEID  60
LHI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382744e-63KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603495.11e-37PREDICTED: NAC domain-containing protein 21/22-like
RefseqXP_018464184.11e-37PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X2
TrEMBLA0A0D3DNB82e-36A0A0D3DNB8_BRAOL; Uncharacterized protein
STRINGBo8g054390.14e-37(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2741233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.15e-28NAC domain containing protein 74