PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24871_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 290aa    MW: 32954 Da    PI: 8.4432
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24871_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.37.8e-09142190250
                  XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                  k+ kr +r  +NReAA rs +RK  ++ eLe  v++L ++ ++L  ele
  RrC24871_p1 142 KDPKRVKRILSNREAAARSKERKALRQSELEIQVETLYTQIRKLTAELE 190
                  6779****************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-7139195No hitNo description
SMARTSM003381.0E-8141205IPR004827Basic-leucine zipper domain
PfamPF001701.6E-6142190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.76143195IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-9145196No hitNo description
CDDcd147034.54E-10146197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTPPLHPCTQ MLNSSSGSNL AHKRGSSDNF VSLLAAQNNQ GIYPKPIEMP VGVRSSVREN  60
AWPHEDVNVD VPNGNKRRAV NEIAPPNRIW RSVSADSSLY APPNPQGVSV DVGNDIAYGG  120
VFTAYQLSKI AACDDLKAMA KKDPKRVKRI LSNREAAARS KERKALRQSE LEIQVETLYT  180
QIRKLTAELE IEKRERMAAD DECVRLKILL GGGEDPRVRD HELNNYLTGE VHRLTEEVSR  240
QREEMSRLRE EVSEYRRKES ERTNANMLEQ LNINQQFQKT PQQTNNYNFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479728.10.0PREDICTED: uncharacterized protein LOC108850748
TrEMBLA0A397ZM422e-97A0A397ZM42_BRACM; Uncharacterized protein
TrEMBLA0A3P6D0582e-97A0A3P6D058_BRACM; Uncharacterized protein
STRINGBra030312.1-P1e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1940967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.34e-24bZIP family protein