PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24924_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 261aa    MW: 29324.2 Da    PI: 7.6739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24924_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000151232323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C+ C+ksF++   L  H+r+H
  RrC24924_p1 12 CQVCKKSFPNGRALGGHMRSH 32
                 ********************9 PP
2zf-C2H212.70.00039235257123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ Cg++F +   L  H ++H
  RrC24924_p1 235 YKCELCGRVFESGQALGGHKKVH 257
                  9***********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5771037IPR007087Zinc finger, C2H2
SMARTSM003550.171032IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-91032IPR007087Zinc finger, C2H2
SuperFamilySSF576674.39E-51134No hitNo description
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-6192257No hitNo description
PROSITE profilePS501579.245194221IPR007087Zinc finger, C2H2
SMARTSM003550.043194216IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-8194218IPR007087Zinc finger, C2H2
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
PfamPF139127.8E-10234258IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.24235257IPR007087Zinc finger, C2H2
SMARTSM003550.016235257IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMYSLLKETR NCQVCKKSFP NGRALGGHMR SHTRTLSASN GSTVPSLKTP TKLGENIRLN  60
ETVLMRSVHA SEVGRPEPDL KREEGGQQIT CKRKIVVDLD ECQSPLTAVE EAALVIVAMS  120
KGERPANSQN WNAIDRLLST PNEKEEYTRK SVDIDSDDDG RVLTEAIDQN EEGDEDDEDE  180
TYLVEKENQC KKKFKCDICG KVCHSYQALG GHRTSHRTKR LKICDKNGQP MVRHYKCELC  240
GRVFESGQAL GGHKKVHYAF L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479278.11e-170PREDICTED: zinc finger protein ZAT1
TrEMBLA0A3P6ETF41e-142A0A3P6ETF4_BRAOL; Uncharacterized protein
STRINGBo7g098740.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.13e-62C2H2-like zinc finger protein