PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25277_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 225aa    MW: 25133 Da    PI: 10.2021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25277_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.3e-19389493
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                   + +d++++ r +l+ +f++e+g+ k++   ltl  ++g +W+v++  ++++++  l+kGWkeF+kangLk+g+ ++++  + +++ ++
  RrC25277_p1  3 LKLAHDSFRKYRQYLSVPFMRENGMTKPG--LLTLVGKDGGKWKVNMYEERSGNSLCLGKGWKEFAKANGLKTGEYFTLESAW-KNEIPM 89
                 556789999**************999766..7***************66999999************************9666.444455 PP
2B3443.9e-141362191096
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                    k + l lp +f++++g+kk +  ++tl  ++g +W  +l    ++g++ ++ GW++F++ang+k gD++ + ++++ +++ + +k+
  RrC25277_p1 136 DVKACTLHLPSEFVTTIGIKKLG--KITLLGKDGMKWWGYL--LSRKGTVAIGIGWRNFCEANGVKLGDSFSLVFINEeEDTGPIFKF 219
                  456789***********999755..8***************..888899**********************99999877888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.929196IPR003340B3 DNA binding domain
SMARTSM010199.3E-20196IPR003340B3 DNA binding domain
PfamPF023621.5E-16290IPR003340B3 DNA binding domain
CDDcd100179.96E-16592No hitNo description
SuperFamilySSF1019361.1E-17593IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15990IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-15124210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16125210IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.885127222IPR003340B3 DNA binding domain
SMARTSM010197.1E-14127223IPR003340B3 DNA binding domain
PfamPF023622.4E-12136220IPR003340B3 DNA binding domain
CDDcd100172.41E-9140210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKLKLAHDSF RKYRQYLSVP FMRENGMTKP GLLTLVGKDG GKWKVNMYEE RSGNSLCLGK  60
GWKEFAKANG LKTGEYFTLE SAWKNEIPML SLVNTESASD RKQRGKSSKA MEKDRSTDTS  120
SIVQNRVVTL ALETKDVKAC TLHLPSEFVT TIGIKKLGKI TLLGKDGMKW WGYLLSRKGT  180
VAIGIGWRNF CEANGVKLGD SFSLVFINEE EDTGPIFKFS PNSGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479772.11e-160PREDICTED: B3 domain-containing protein REM12-like
SwissprotP0CAP48e-77REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078JGZ91e-150A0A078JGZ9_BRANA; BnaCnng48570D protein
STRINGBo4g154880.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.13e-70B3 family protein