PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2537_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 311aa MW: 35038.2 Da PI: 7.0683

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2537_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.4e-31	190	244	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH++Fve+v+ LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ RrC2537_p4 190 KTRIRWTQDLHDKFVECVNLLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 244 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.234	187	247	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-28	189	245	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-17	189	244	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	190	245	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-8	194	243	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-7	272	293	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDNINYETSN ASQGSRLQLP PHPQPPQPFN LQDVNMIHYS QSPPLTIETF SGLTPYDDTE 60 NQSFSAQCSS SKPYPPLFHP CHHQDSASLS LDQSQSMVPM QPLEDQYLKP LYQRSHANDF 120 AATNASSASY SLSFEASQDP QELCRRTFSN SNVTQLNFSS SILPRFSSHS SFSTHGGSMA 180 SNSGAVIGNK TRIRWTQDLH DKFVECVNLL GGADKATPKA ILKLMDSEGL TIFHVKSHLQ 240 KYRIAKYIPD SQEGKFEKRY CSKELLDTKA GVHIKEALQL QLDIQRHLHE QLELPITVST 300 ELKKELTRRF H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-23	190	247	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013715394.1	1e-174	myb family transcription factor PHL5-like
Refseq	XP_018510816.1	1e-174	PREDICTED: myb family transcription factor PHL5-like
Swissprot	Q0WVU3	1e-149	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	M4CYD1	1e-173	M4CYD1_BRARP; Uncharacterized protein
STRING	Bra009228.1-P	1e-174	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	1e-124	G2-like family protein