PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25395_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 164aa    MW: 17760 Da    PI: 8.6183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25395_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-1691141155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++ykGVr ++ +g+W AeI+dps    + r +lg f tae+Aa+a+++a+ ++ g
  RrC25395_p1  91 KKYKGVRKKP-SGKWSAEIWDPSL---KIRRWLGMFPTAEMAARAYDEAAAEFIG 141
                  59*****999.7*********943...4899*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.36E-1591131No hitNo description
SMARTSM003802.2E-2592156IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-1692143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-2192142IPR001471AP2/ERF domain
PROSITE profilePS5103219.59992153IPR001471AP2/ERF domain
PfamPF008474.5E-992141IPR001471AP2/ERF domain
PRINTSPR003678.9E-793104IPR001471AP2/ERF domain
PRINTSPR003678.9E-7115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDYSDNVPSD AQNPIAPRPP ALYLTRDQEH QIMVSALRQV ISNVGSDTSS SNGITGGALP  60
PPDAGPCPLC GITGCYGCAF QQRDNETKKE KKYKGVRKKP SGKWSAEIWD PSLKIRRWLG  120
MFPTAEMAAR AYDEAAAEFI GRISARRGQM NGRGVKELSG GGDD
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00594DAPTransfer from AT5G67000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482416.11e-119PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ38Q405e-69EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLA0A397ZPV48e-83A0A397ZPV4_BRACM; Uncharacterized protein
STRINGBra034250.1-P2e-77(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.12e-53ERF family protein