PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC253_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 466aa    MW: 51507.6 Da    PI: 6.2272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC253_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73.1e-114065126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ++++ C+ff+rtG+C yG++C+++H+
  RrC253_p2 40 PGERDCQFFLRTGQCGYGNSCRYNHP 65
               5789*********************9 PP
2zf-CCCH38.81.6e-1286110327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +f++tG CkyG++CkF+H++
  RrC253_p2  86 EPDCEYFLKTGACKYGSTCKFHHPK 110
                789********************96 PP
3zf-CCCH28.33e-09131154326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                ++ C+++ +tG C++G  CkF+H+
  RrC253_p2 131 EKSCPYYVQTGMCRFGVACKFHHP 154
                667********************8 PP
4zf-CCCH37.53.9e-12234257326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +++Crff+ tGtCkyGd Ck++H+
  RrC253_p2 234 RAECRFFMSTGTCKYGDDCKYSHP 257
                799********************8 PP
5zf-CCCH32.41.6e-10270295126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ++++ C +f ++G+CkyG++Ck+ H+
  RrC253_p2 270 PGQPACGNFKAYGFCKYGSNCKYDHP 295
                57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-63966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8123967IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-94165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-64368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-44564IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-683110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.62483111IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-1086110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-688111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-589109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6127156IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4128155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479128156IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-6130154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4133153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929231259IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-8232258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6234257IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10234257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6237256IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-6269296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5269295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464269297IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-8271295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSSETQNSTG PVRSSDKIEE DTLTRMKVTE EQTSPYPDRP GERDCQFFLR TGQCGYGNSC  60
RYNHPLTHLP QAVLYHRDEL PERIGEPDCE YFLKTGACKY GSTCKFHHPK DRNGAEPVLF  120
NVLGYPMRQG EKSCPYYVQT GMCRFGVACK FHHPHPQPHN NNGHSTTYGM PTFPYGMMSL  180
PPATYGVMPP PQVPYPQTYM PFIFAPPQGW SPYMAGYNPV HNNVKTQPDS SSERAECRFF  240
MSTGTCKYGD DCKYSHPNLT HPIVVLPARP GQPACGNFKA YGFCKYGSNC KYDHPVPTAY  300
ASPVSTHPRV STPPPNRSDS ISISNGDKPA AEKNHSSEIE KQDKSEVQGS SQLGHSDSTA  360
ISNGNKLAAE SDSSESGKQE DISDKSQVQD SSQISRSELT VISNGAENHS SEIEKQEEDI  420
SDKSELQDSS QLSRSDSTAL SNGKTDAESP RSETKKQDDN PSQPDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472932.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487721e-168C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A3P6AMJ90.0A0A3P6AMJ9_BRAOL; Uncharacterized protein
STRINGBo3g027010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-161zinc finger nuclease 2