PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25441_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 205aa    MW: 22340.8 Da    PI: 6.1378
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25441_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.5e-116591127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 +++++C+f+++tG Ck+G  CkF+H++
  RrC25441_p1 65 PGQPECQFYRKTGDCKFGTVCKFHHPR 91
                 5789*********************96 PP
2zf-CCCH33.47.5e-11111137127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f+ r+G+Ck+G++CkF+H++
  RrC25441_p1 111 PGEPLCVFYGRYGICKFGPSCKFHHPM 137
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9576492IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-46491IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-86691IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-66893IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-57092IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.239110138IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-8112137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6113138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MPQGVVPVQG WNPYTYTGQL GSVSPSGTGN DHSNYRNLQQ NESGSSVPLG GIYALQSENV  60
FPERPGQPEC QFYRKTGDCK FGTVCKFHHP RDRQPPPPDC LLSPIGLPLR PGEPLCVFYG  120
RYGICKFGPS CKFHHPMGVF TYENTASETG EVVETSSGHS RRVSVSETRQ AATTTSGQDT  180
TIDTTHQGGD TTDLDLEFLT LSPLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259661e-132BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022558647.11e-112zinc finger CCCH domain-containing protein 33-like
SwissprotQ8GXX71e-108C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A3P6AF371e-109A0A3P6AF37_BRAOL; Uncharacterized protein
STRINGBo3g055860.11e-108(Brassica oleracea)
STRINGBo5g151450.11e-108(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.13e-88zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]