PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2554_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 260aa    MW: 29555.9 Da    PI: 5.2857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2554_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10105147754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   Er+RR+r+N+++  Lr l+P       +K++K   L  Av+YI++L
  RrC2554_p3 105 HSERKRRERLNQRIYALRALVPVM-----TKMNKNGALSDAVDYINEL 147
                 57*********************8.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.65E-1096152No hitNo description
SuperFamilySSF474599.03E-1597160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.48198147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-9104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-13105161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8105147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSKSPKWLIN SGLGSKQDMF RTRVLVPVRD GLVELFSFTM KPVDESMVDV IISHCNAFFE  60
PFPEQTFPCG EQAPCLTVMN KQENVVMQAN KKLTNNENFK SKNLHSERKR RERLNQRIYA  120
LRALVPVMTK MNKNGALSDA VDYINELLVE KQKLEDELSG ISEVECRAEE EAVIANPEAE  180
KVSYELIKKE NSNEVNLEVH ETGEGDFLIR VAQEHKRDGF KRLIEAVDSC GLEIIHVNFT  240
RLDLSVMTIL NVKEPGFAPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432717.11e-180PREDICTED: transcription factor bHLH90-like isoform X1
SwissprotQ0WNR21e-112BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A3P5Y9L01e-148A0A3P5Y9L0_BRACM; Uncharacterized protein
TrEMBLM4ESE51e-148M4ESE5_BRARP; Uncharacterized protein
STRINGBra031723.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-114bHLH family protein