PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2596_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 228aa    MW: 25332.7 Da    PI: 4.3883
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2596_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY292.1e-0950793059
                TT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY 30 agCpvkkkversaedpkvveitYegeHnhe 59
                +gCp++k+vers+ dp+ + itY  +Hnh+
  RrC2596_p4 50 PGCPARKQVERSRVDPSKLMITYACDHNHP 79
                59***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.2041381IPR003657WRKY domain
SMARTSM007740.00153880IPR003657WRKY domain
PfamPF031068.7E-74379IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-95081IPR003657WRKY domain
SuperFamilySSF1182906.15E-75081IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MHRRGIQESD DEEDETYNDD LRVEERYIHR LIPGLGESTD KSRSKVRLIP GCPARKQVER  60
SRVDPSKLMI TYACDHNHPF PSAANNKSHH HHRTTAVVLK TAKKEENMEE EYEEEEEATV  120
AAEEPVGLDL SHVDSPLLLG GCYSEVGEFG WFYDASISSS SGSSYGGSFL DVTLESGFSV  180
GGEEDESLYG DLGDLPDCAS VFRRGTVGTE EQRQMCDFGA VPFCDSSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465840.0KC246584.1 Brassica napus WRKY transcription factor 69.2 (WRKY69.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481437.11e-106PREDICTED: probable WRKY transcription factor 69 isoform X2
SwissprotQ93WV52e-89WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A0D3BX076e-96A0A0D3BX07_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C2T06e-96A0A3P6C2T0_BRAOL; Uncharacterized protein
TrEMBLV9LY666e-96V9LY66_BRANA; WRKY transcription factor 69.2
STRINGBo4g108250.11e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124781930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.22e-87WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]