PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 474aa    MW: 54053 Da    PI: 4.4118
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3434.78.9e-133363731354
               XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksn..........ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 
               ++lk+rmwkd++l+++lk+++k++    ++ t++ +s+          ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkpv+g+sdsL
  RrC25_p6  36 DDLKRRMWKDRNLMCKLKQQQKDNSYPSSS-TSTPSSSssfssssaivRRAEASRRKKMARSQDSVLKYMMKIMEVCKARGFVYGIVPEKGKPVTGSSDSL 135
               79********************98755555.55554445799999******************************************************** PP

               XXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT.--T CS
      EIN3  92 raWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg.lsk 188
               r+WWke+v+fd+++p+a+s+y   +a++li+s+es +   ++s+ h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWP+G+e wwge+g ++ 
  RrC25_p6 136 RRWWKENVQFDQTAPNAVSDYltlAAAQLISSSESLD---PNSYIHMLHELQDTTLGSLLSALMQHCVPPQRRFPLEKGLAPPWWPNGTEMWWGEQGaTAF 233
               ***********************9999***9977766...9********************************************************9999 PP

               T--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
      EIN3 189 dqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqk.edvegkk 288
               ++g+ppy+kphdl+kawkvsvL+avikhmsp++e++r+l+rqsk+lqdkm+ake++++++vlnqee+++              +++++s++++  +ve+++
  RrC25_p6 234 EHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLERVRRLARQSKCLQDKMMAKETDTWSRVLNQEEALL--------------KRLKISDDDEeAEVEVDE 320
               ******************************************************************976..............466676663303333444 PP

               XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
      EIN3 289 eskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354
               e +           + ++ +krk +++e++++ s+  ++tcq+ ++++s+ +l+f dkn ++ +e+
  RrC25_p6 321 EDQ-----------EPAMGNKRKGEFVEEEAALSN--VYTCQNTSCPSSDASLGFVDKNLRTGHEM 373
               433...........57899*************999..7************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.1E-12436299No hitNo description
Gene3DG3DSA:1.10.3180.105.1E-68175306IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.09E-58177302IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MVEVQDLEPL SPIQDDDCEE DEDDELDRLG EDISYDDLKR RMWKDRNLMC KLKQQQKDNS  60
YPSSSTSTPS SSSSFSSSSA IVRRAEASRR KKMARSQDSV LKYMMKIMEV CKARGFVYGI  120
VPEKGKPVTG SSDSLRRWWK ENVQFDQTAP NAVSDYLTLA AAQLISSSES LDPNSYIHML  180
HELQDTTLGS LLSALMQHCV PPQRRFPLEK GLAPPWWPNG TEMWWGEQGA TAFEHGPPPY  240
RKPHDLRKAW KVSVLAAVIK HMSPNLERVR RLARQSKCLQ DKMMAKETDT WSRVLNQEEA  300
LLKRLKISDD DEEAEVEVDE EDQEPAMGNK RKGEFVEEEA ALSNVYTCQN TSCPSSDASL  360
GFVDKNLRTG HEMECLYGTQ EPIYQSSVSS DGFVRSITTT SDDDDNGNDT TVYQNQDDYL  420
WFERLHDFNC PDEITAVDLN QLPDHSVSNP TVNEEDFSLW DMGCEDRDIY MSQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-581753051130Protein ETHYLENE INSENSITIVE 3
4zds_B1e-581753051130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488886.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ50.0EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A3P6AMF70.0A0A3P6AMF7_BRAOL; Uncharacterized protein
STRINGBo3g100500.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]