PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC26114_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 82aa    MW: 9173.32 Da    PI: 11.3498
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC26114_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.4e-111859445
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                  k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  RrC26114_p1 18 QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 59
                 57889************************9887777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.6E-101062No hitNo description
SMARTSM003381.8E-61578IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4381761IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.38E-81963No hitNo description
PfamPF001705.2E-81960IPR004827Basic-leucine zipper domain
PROSITE patternPS0003602237IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MMLAAASDSS GSKDKLDQKT LRRLAQNREA ARKSRLRKKA YVQQLENSRL KLTQLEQELQ  60
RARQQGVFIS SSGDQAHSTG GN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936103e-86AB493610.1 Arabidopsis thaliana At3g12250 mRNA for hypothetical protein, partial cds, clone: RAAt3g12250.
GenBankAJ3205403e-86AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBankAK1754523e-86AK175452.1 Arabidopsis thaliana mRNA for bZip transcription factor TGA6 / AtbZip45, complete cds, clone: RAFL21-87-N17.
GenBankAK1768503e-86AK176850.1 Arabidopsis thaliana mRNA for bZip transcription factor TGA6 / AtbZip45, complete cds, clone: RAFL25-40-P05.
GenBankBT0295153e-86BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441341.12e-48PREDICTED: transcription factor TGA6-like isoform X1
RefseqXP_018441342.18e-49PREDICTED: transcription factor TGA6-like isoform X2
SwissprotQ391402e-44TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A078IKY71e-45A0A078IKY7_BRANA; BnaA01g30760D protein
TrEMBLA0A078IRY21e-45A0A078IRY2_BRANA; BnaCnng22950D protein
TrEMBLA0A0D3AEB11e-45A0A0D3AEB1_BRAOL; Uncharacterized protein
TrEMBLA0A3N6PZ581e-45A0A3N6PZ58_BRACR; Uncharacterized protein
TrEMBLA0A3P6G0951e-45A0A3P6G095_BRAOL; Uncharacterized protein
TrEMBLM4FC891e-45M4FC89_BRARP; Uncharacterized protein
STRINGBra038705.1-P2e-46(Brassica rapa)
STRINGBo1g139470.12e-46(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.54e-28TGACG motif-binding factor 6