PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC26123_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 265aa    MW: 27737.5 Da    PI: 7.0846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC26123_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.7e-065174326
                 S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                  + C+ f+    C+yG++C+F H+
  RrC26123_p1 51 GRHCKKFYTEEGCPYGESCTFLHD 74
                 5669*****9*************7 PP
2zf-CCCH43.26.3e-14123148126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  RrC26123_p1 123 WKTRICNKWEITGYCPFGAKCHFAHG 148
                  8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.474875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2444876IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-74875IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-84975IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-15118149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-9120149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178122150IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9122149IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-11123148IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
VAAAHEEERS GGSGTPAPTT TTTSAVEPRE EYQIPSLVSS TAEEGGRSFK GRHCKKFYTE  60
EGCPYGESCT FLHDEASRNR ESVAISLGPG GYGGGGGGNS NVVVLGGGGC GGSGIDILKP  120
SNWKTRICNK WEITGYCPFG AKCHFAHGAA GKKVTAFSSD LFDERSELHR FGGGLVEGEG  180
KDGGVSSNPD IKQTGPNPKG HSDTTTTLLS PGVVSHHADA SYHSGAALQR ASSAVTQKPG  240
IRTHQKWKGP AKISRIYGDW IDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892551e-137AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436497.11e-142PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-120C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A397Y5P71e-139A0A397Y5P7_BRACM; Uncharacterized protein
STRINGBo5g048980.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-100C3H family protein