PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2625_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 113aa    MW: 12655.5 Da    PI: 9.4471
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2625_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.7e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +++++G g Wk I r         +R+  ++k++w+++
       RrC2625_p5  5 KLKWTGEEEEALRAGIERHGAGKWKNILRDPDfshqlSNRSNIDLKDKWRNL 56
                     689**********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.275162IPR017930Myb domain
SuperFamilySSF466893.88E-16362IPR009057Homeodomain-like
SMARTSM007179.8E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-14457IPR009057Homeodomain-like
CDDcd116605.38E-21757No hitNo description
PfamPF139217.9E-8858No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MGNQKLKWTG EEEEALRAGI ERHGAGKWKN ILRDPDFSHQ LSNRSNIDLK DKWRNLCVAP  60
GTQFVKDKPR TTKIVSSALL LFSVATTFPN GPCGVIVESN SQGMKCRQLL EES
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895077e-57AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896077e-57AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453047.12e-49PREDICTED: telomere repeat-binding factor 5 isoform X1
SwissprotF4I7L11e-34TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A397YV686e-40A0A397YV68_BRACM; Uncharacterized protein
TrEMBLA0A397Z0R56e-40A0A397Z0R5_BRACM; Uncharacterized protein
STRINGBra016037.1-P5e-38(Brassica rapa)
STRINGBo6g116150.12e-38(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16580812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.16e-37MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]