PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2640_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 74aa    MW: 8760.92 Da    PI: 11.1849
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2640_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182374253
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
                rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L  rq+ vWFqNrRa
  RrC2640_p2 23 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRA 74
                78889**********************************************8 PP
2HD-ZIP_I/II77.42.3e-252374152
  HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA 52
                 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRA
   RrC2640_p2 23 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRA 74
                 69*************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-19573IPR009057Homeodomain-like
SuperFamilySSF466897.27E-18874IPR009057Homeodomain-like
PROSITE profilePS5007116.4551974IPR001356Homeobox domain
SMARTSM003891.3E-82174IPR001356Homeobox domain
CDDcd000862.08E-122274No hitNo description
PfamPF000469.3E-162374IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MNRLPSSSED DEELSHGGSA PPRKKLRLTR EQSRLLEDSF RQNHTLNPKQ KEALAKHLML  60
RPRQIEVWFQ NRRA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534486e-84AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481701.19e-47PREDICTED: homeobox-leucine zipper protein ATHB-17-like
SwissprotQ8S9N63e-40ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLM4E7Y22e-44M4E7Y2_BRARP; Uncharacterized protein
STRINGBra024888.1-P4e-45(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.17e-37homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]