PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC26427_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 190aa    MW: 22089.7 Da    PI: 9.8436
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC26427_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181659146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r+++T++E+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
      RrC26427_p1 16 RNPFTEQEEERLLAAHRIHGNR-WSIIARLFP-GRTDNAVKNHWHV 59
                     789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-21167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-8123IPR009057Homeodomain-like
PROSITE profilePS5129425.5431165IPR017930Myb domain
SMARTSM007178.3E-161563IPR001005SANT/Myb domain
PfamPF002492.0E-151658IPR001005SANT/Myb domain
CDDcd001671.20E-121858No hitNo description
Gene3DG3DSA:1.10.10.601.0E-172459IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
SCRLRWFNQL DPRINRNPFT EQEEERLLAA HRIHGNRWSI IARLFPGRTD NAVKNHWHVI  60
MARRTRQTSK PRILPSTTSS SSLMATEQIF MASGDRKRIH GAVNYPYQFS HVNHLQFLKE  120
FFTGKIGLDT KANQGKKPME FYNFLQVDMD SNKSEIIDQD SDQSNPDDSD NKNESRIPFF  180
DFLSVGNSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1926545108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers. {ECO:0000269|PubMed:18952777}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895001e-119AC189500.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086N06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468821.11e-133PREDICTED: transcription factor MYB23-like
SwissprotQ9FX361e-105MYB54_ARATH; Transcription factor MYB54
TrEMBLA0A3P6C2991e-118A0A3P6C299_BRACM; Uncharacterized protein
STRINGBra015992.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28182769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73410.11e-100myb domain protein 54
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]