PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC26695_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 110aa    MW: 12488 Da    PI: 10.4678
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC26695_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-204393155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  RrC26695_p1 43 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 93
                 79*****998.**********843...6**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-134393IPR001471AP2/ERF domain
CDDcd000183.92E-2343103No hitNo description
PROSITE profilePS5103223.28844101IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2244102IPR016177DNA-binding domain
SMARTSM003801.4E-3644107IPR001471AP2/ERF domain
PRINTSPR003672.7E-114556IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-3345102IPR001471AP2/ERF domain
PRINTSPR003672.7E-116783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MTGSSISSVK QQSPVEDEES HHHHQDQEES HRTNNKKRVR PDPGYRGVRM RTWGKWVSEI  60
REPRKKSRIW LGTFSTAEMA ARAHDAAALT IKGTSAVLNF PELATCLPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19451011572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465107.19e-57PREDICTED: ethylene-responsive transcription factor ERF037-like
SwissprotO806546e-48ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLA0A0D3CW763e-54A0A0D3CW76_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H3Q83e-54A0A3P6H3Q8_BRAOL; Uncharacterized protein
STRINGXP_010471905.12e-55(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.13e-43ERF family protein