PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC26720_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 364aa    MW: 38945.9 Da    PI: 4.2932
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC26720_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS133.91.7e-412373633136
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +++ +c   ++s+  e a ++L r++e +s++gdp++R+ +yf eAL++rl+       ++++ +++s+  +++ ++++k++++++P++kf+hltaNq
  RrC26720_p1 237 KAIHDCSLILDSEPPEDAAKALVRIRESVSEHGDPTERVGFYFSEALRSRLSP------NSVS-NDSSQAAVENLVMSYKTLNDACPYFKFAHLTANQ 327
                  5677888999999999************************************9......3332.233334599999********************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                  aIlea+e+++++Hi+Df+i qG+QWpaLlqaLa+R+
  RrC26720_p1 328 AILEATEHSSKIHIVDFGIVQGIQWPALLQALATRS 363
                  ***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.975209364IPR005202Transcription factor GRAS
PfamPF035146.0E-39237363IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAHQVIK QKQQQEQQQQ QPPDHQIFGI NPLSLNPWPT PNTQSLGFGL  60
SGSGFPDPFQ VTGGGDPGDS AFPFHSLDHH HPTSGGGGGG GGFRLSDFDG GAGGEFESDE  120
WMETLITGGD SVPAEGPPDC DTWQNNSDFV IYGPDPFAAY PSRLTVPCSQ PSDLNQVIAT  180
STSLPSALWA PSSPLSVPPP LPSSSPPRQK TKHPEPNDSE EDGGGSQDFD LEPPLLKAIH  240
DCSLILDSEP PEDAAKALVR IRESVSEHGD PTERVGFYFS EALRSRLSPN SVSNDSSQAA  300
VENLVMSYKT LNDACPYFKF AHLTANQAIL EATEHSSKIH IVDFGIVQGI QWPALLQALA  360
TRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-372343623134GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441267.10.0PREDICTED: scarecrow-like protein 4
SwissprotQ9FL031e-139SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A3P6EQR70.0A0A3P6EQR7_BRAOL; Uncharacterized protein
STRINGBo7g064520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-125GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]