PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2681_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 161aa MW: 17842.9 Da PI: 8.6832

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2681_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	56.7	4.8e-18	2	39	22	59
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYYrCt gC vkk+vers+++p++v +tYeg+H+h+ RrC2681_p5 2 RSYYRCTIVGCGVKKRVERSSDNPSIVMTTYEGQHTHP 39 9************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	18.142	1	41	IPR003657	WRKY domain
Pfam	PF03106	2.8E-13	2	39	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	9.6E-16	2	41	IPR003657	WRKY domain
SuperFamily	SSF118290	7.32E-15	2	41	IPR003657	WRKY domain
SMART	SM00774	1.6E-10	2	40	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MRSYYRCTIV GCGVKKRVER SSDNPSIVMT TYEGQHTHPF PMTPRGHIGM LTSPILDLGA 60 TTASSSSSFS IPQPRYLLSQ HHQPYSSMYN KNSLSMINRS SSSDGTFVNP GSSSFHGFAY 120 EMSQASTSTT TIRDHGLLQD ILPSQIRSDT INTRTNEEDK I

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430059	1e-141	KF430059.1 Brassica rapa WRKY transcription factor 48 (WRKY48) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018435066.1	1e-114	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	3e-85	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A0D3AX35	5e-93	A0A0D3AX35_BRAOL; Uncharacterized protein
STRING	Bo2g151740.1	9e-94	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-78	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]