PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2703_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 340aa    MW: 38345.2 Da    PI: 6.5082
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2703_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.25.8e-201053245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                + en+  rq tf+kR+ngilKKA+ELS+LCd++  +++fs+ gk
  RrC2703_p3 10 KLENTNGRQATFAKRKNGILKKANELSILCDIDLILLMFSPAGK 53
                6799*************************************997 PP
2K-box13.14e-06801571485
       K-box  14 aeslqqelakLkkeienLq.....reqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                 +++  + l+ L  + + Lq        R   + +L++++ + +L qLe  + +sl + R++K++l  +q + +q  + 
  RrC2703_p3  80 TKKKVESLEDLSTQASVLQariseIHGRLSYWTELDKINnVDHLGQLEISIRQSLDQLRAHKEHLGQQQQQAMQIENA 157
                 4444455555555555555222212225566789999963889**********************9999999997655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-24185IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.731153IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-28160IPR002100Transcription factor, MADS-box
CDDcd002661.53E-24284No hitNo description
PRINTSPR004041.3E-17323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT FAKRKNGILK KANELSILCD IDLILLMFSP AGKASLCCGH  60
RSSIEEVIAK FSQVTPEERT KKKVESLEDL STQASVLQAR ISEIHGRLSY WTELDKINNV  120
DHLGQLEISI RQSLDQLRAH KEHLGQQQQQ AMQIENANFV KDWSTCSLQD GIEIPLEQQL  180
QSMSWILNSN NNTNIVTEEH NPIPQREVEC SASSSFGSYP GFLDELTTTN GDIKPQINMQ  240
QPFTNNNMIS YNPNIQNDVK PHHQTYPPPP LPHPPVFNFP MNQRDYHMNG FFEAPPPPPP  300
PGTSAYNNNS QARFGSSSSS LPCSISMLDE YLFSQMQQPN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464591e-129DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBankDQ6529541e-129DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455441.10.0PREDICTED: agamous-like MADS-box protein AGL30
SwissprotQ1PFA41e-171AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLM4DLM30.0M4DLM3_BRARP; Uncharacterized protein
STRINGBra017404.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-151AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]