PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC27158_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 231aa    MW: 26389.8 Da    PI: 6.9276
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC27158_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.22.5e-11210231122
                  ---SS-EEEEEEE--TT-SS-E CS
         WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                  ldDgy+WrKYGqK vk+s++pr
  RrC27158_p1 210 LDDGYRWRKYGQKAVKNSPYPR 231
                  59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-11195231IPR003657WRKY domain
SuperFamilySSF1182903.14E-9203231IPR003657WRKY domain
PROSITE profilePS5081114.389205231IPR003657WRKY domain
PfamPF031063.5E-7211231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEKKIKEDHH QEQQREELNS TKNTETTTST HMMNLVTSSD HHHHQMELAG NNMNLSTIFD  60
TPISSPFPYS YFSDHSSNNP NSFLYLLRQD QPQFASSSNS SSFSFDAFHL QNNTNHFFTD  120
LPTSQPITKA ESSEVVSTTP TSPNSTSFSS SFNEAANENI NKEVTVKDQE DGDQHEPKGT  180
KPQMKAKKKQ QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP R
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300591e-170KF430059.1 Brassica rapa WRKY transcription factor 48 (WRKY48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435066.11e-169PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ44e-61WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A398AMI11e-112A0A398AMI1_BRACM; Uncharacterized protein
STRINGBra020628.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-35WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]