PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2737_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 299aa MW: 34187.4 Da PI: 6.395

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2737_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	105.2	5e-33	37	132	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 l++r+w+e+De+++L+Gl+d++ +t +ps d+d+f++fv++si++k+sk+ql++K+r+L++Kf +++++++g++p f++ d+++f++s++iWg RrC2737_p3 37 LIKRIWNEDDELSILKGLVDYRVNTRHDPSFDWDGFFRFVQGSIHVKFSKEQLFSKVRKLRRKFALHMERIDRGEDPLFTRLTDSQAFGYSNMIWG 132 579********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	9.0E-27	39	132	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MATTNRLNCS DTCLQKSPSE DVSRNKKKKK NKSASPLIKR IWNEDDELSI LKGLVDYRVN 60 TRHDPSFDWD GFFRFVQGSI HVKFSKEQLF SKVRKLRRKF ALHMERIDRG EDPLFTRLTD 120 SQAFGYSNMI WGVYQPEVAA NDEKAQEEEA QGGGIEKSPG ETNAFREIGR VTNDEPVKDN 180 GRVEGNNEPV NEDGAEKGAF DGKSLHEVGV DKTTEYGKES HDDDADELRV VEDAFETTIL 240 QGLSVWQRKL QLKKLMMNLG TEKRKELSNE WKALCSEEIK FKIKKLRFTA KLVEAAYDG

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:21875893, ECO:0000269\|PubMed:29192025, ECO:0000305\|PubMed:18162594}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00061	PBM	Transfer from AT4G00270	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269\|PubMed:12535344}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486701.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like 1
Swissprot	Q9ASZ1	1e-69	STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBL	A0A078GNW2	1e-141	A0A078GNW2_BRANA; BnaC06g12070D protein
TrEMBL	A0A0D3CSS7	1e-141	A0A0D3CSS7_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FT81	1e-141	A0A3P6FT81_BRAOL; Uncharacterized protein
STRING	Bo6g057560.1	1e-142	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	1e-69	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Nietzsche M,Schießl I,Börnke F The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Front Plant Sci, 2014. 5: p. 54 [PMID:24600465] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]