PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2793_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 71aa    MW: 8110.31 Da    PI: 11.4629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2793_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.7e-161356249
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                +ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a
  RrC2793_p1 13 KYKGIRRRK-WGKWVSEIRVPGT---RERLWLGSFSTAEGAAVAHDVA 56
                8*****998.**********943...5******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.80E-211260No hitNo description
SuperFamilySSF541715.95E-161361IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-231360IPR001471AP2/ERF domain
PROSITE profilePS5103218.2411371IPR001471AP2/ERF domain
SMARTSM003801.2E-211368IPR001471AP2/ERF domain
PfamPF008472.5E-81356IPR001471AP2/ERF domain
PRINTSPR003672.1E-91425IPR001471AP2/ERF domain
PRINTSPR003672.1E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MDPRDGGETH QAKYKGIRRR KWGKWVSEIR VPGTRERLWL GSFSTAEGAA VAHDVAFLLL  60
APTIFPRQRS F
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161628e-65AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161638e-65AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0109998e-65BT010999.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankBT0148168e-65BT014816.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankCP0026848e-65CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691101.13e-36ethylene-responsive transcription factor ERF020-like
RefseqXP_018455497.13e-36PREDICTED: ethylene-responsive transcription factor ERF020
RefseqXP_022544890.13e-36ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I84e-33ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A3P6BLW35e-35A0A3P6BLW3_BRACM; Uncharacterized protein
STRINGBo6g113060.17e-35(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-35ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]