PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC27_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 703aa    MW: 78705.5 Da    PI: 7.8996
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC27_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.63.1e-19185234151
   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
               k +l W+  LH+ F++a++++ G +kA+Pk+ile+m+v  Lt+e+v+SHLQ
  RrC27_p1 185 KSKLSWSDYLHDLFLQAIQHI-GLDKAVPKKILEFMDVSYLTRENVASHLQ 234
               679******************.****************************9 PP
2Response_reg48.16.2e-1758826109
                   EEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  26 vaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   v +++d++eal +l  +++++Dli++D  mpgm+Gl+l ++i+++  + p+i++++  +    +e l  Ga  fl Kp++p +l +
      RrC27_p1   5 VIAVRDAREALFTLkiQRNNIDLIVTDYYMPGMNGLQLKQQITRQFGNFPVIIMSSDTN--KEQESLACGALCFLPKPIKPTDLPH 88 
                   55788999999888445666**********************99999********7766..67899***************99965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011025.913194IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.73E-18386No hitNo description
SuperFamilySSF521722.85E-183102IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.9E-193119No hitNo description
PfamPF000725.3E-14589IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466891.11E-12183239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-19183245IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-22185234IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MEITVIAVRD AREALFTLKI QRNNIDLIVT DYYMPGMNGL QLKQQITRQF GNFPVIIMSS  60
DTNKEQESLA CGALCFLPKP IKPTDLPHIY QVALTYKRNS MSILRTEKNH KDTNVSIPQK  120
IHLVPEQANV SKTKKNKFLS KSDSRSVNNL NGSCDSTKSS RKNGKRKSKF YSGDDAESMP  180
QPSKKSKLSW SDYLHDLFLQ AIQHIGLDKA VPKKILEFMD VSYLTRENVA SHLQLKIVTI  240
QKYRNFLRRV AERGSLCSGT LHGRGMEPYH SNYITSSSWY NKGLNNKSFY SKPTPGHGQS  300
RLLSNTCEPV RFNQMPYSHM NRLSTYEPQR TGSNSTMPIK SNFRFSTQPL QNEGNRSFLE  360
PTVMANKTGQ TSQVPGFGQH GISATNDNNF NNNMMRSYGS STSNQLGISS YASSTFNQPR  420
ISSYASSTSN QQGMIHGSST PNQPGLRSYR SSISNQPVLS SRGSFSPTQP GMSNYESLTS  480
NQPALSTHGS LFPNQPEMSS HGSLPHTQPG MSSFGSLTTN HLGMVSYESL NPTQPGPSNI  540
SYGLLLSNEN TAYKPQTYAS TTIQPNLETT QLDNLCLHYD LGNINELPCD ISNFDFNHGK  600
QQQEEVASTN KFEIPANFET EVKQTFSLEE DGGWTFLNIN QGHSNEETSN NFAAPEINDP  660
TFNKNPNHAQ EQDVSDFDWS LLDLENLANE YEFMDPMFTS DMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-15184251464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469579.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP51e-173ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A3P6CJ810.0A0A3P6CJ81_BRAOL; Uncharacterized protein
STRINGBra028705.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-166response regulator 21