PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC28084_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

EIL

Protein Properties

Length: 91aa MW: 10093.3 Da PI: 4.9446

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC28084_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	69.3	1.1e-21	1	53	64	115
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX.XXXXXXX.XXX CS EIN3 64 mevcnaqGfvYgiipekgkpvegasdsLra.WWkekvefdrng.paaisky.qak 115 mevc+++GfvYgiipekgkpv+g+sd++r+ WWkek fd+ng +aai+ky + + RrC28084_p1 1 MEVCKVRGFVYGIIPEKGKPVSGSSDNIREaWWKEK--FDKNGaAAAIAKYyDVD 53 9**************************55**5..66665167899997433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	2.4E-22	1	52	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MEVCKVRGFV YGIIPEKGKP VSGSSDNIRE AWWKEKFDKN GAAAAIAKYY DVDGREEASG 60 CLKTVEEIKV EKEQPTGTSQ PVREAPEKET T

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013649660.1	1e-19	ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_022560614.1	1e-19	ETHYLENE INSENSITIVE 3-like 3 protein isoform X1
Refseq	XP_022560615.1	1e-19	ETHYLENE INSENSITIVE 3-like 3 protein isoform X2
Swissprot	O23116	5e-19	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	A0A444DAZ2	4e-20	A0A444DAZ2_ENSVE; Uncharacterized protein
STRING	Bra015970.1-P	4e-19	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	2e-21	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]