PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28148_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 183aa    MW: 20857.7 Da    PI: 7.2117
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28148_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB52.41.3e-16861294992
        NF-YB  49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                   asdkcq+ek kt+ng+dll a++tl fe+y+eplk+y ++y e
  RrC28148_p1  86 RASDKCQKEKWKTVNGEDLLRAMSTLDFENYLEPLKLYHARYME 129
                  59****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004358.6E-51168IPR013499DNA topoisomerase I, eukaryotic-type
SuperFamilySSF563491.44E-142287IPR011010DNA breaking-rejoining enzyme, catalytic core
PfamPF010281.2E-192387IPR013500DNA topoisomerase I, catalytic core, eukaryotic-type
Gene3DG3DSA:3.90.15.105.3E-202387IPR014711DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type
SuperFamilySSF471132.15E-1287164IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.4E-1688162IPR009072Histone-fold
PRINTSPR006151.4E-691109No hitNo description
PRINTSPR006151.4E-6110128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006265Biological ProcessDNA topological change
GO:0005694Cellular Componentchromosome
GO:0003677Molecular FunctionDNA binding
GO:0003917Molecular FunctionDNA topoisomerase type I activity
GO:0003918Molecular FunctionDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNMGKGVPVP ECPIETLMER PGSALKGQSD KEKYEKAKNL TNNIDNIRAT FTKTFTSKDV  60
TKKQIAVTTY LIDKLAVRAG NEKIIRASDK CQKEKWKTVN GEDLLRAMST LDFENYLEPL  120
KLYHARYMEP FNDWSNAGNR GGDGFLSEEE IRARSNETLE NEDIQQWLFL ACLHCPCRGC  180
EAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2b9s_A3e-141483226295topoisomerase I-like protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.72e-19nuclear factor Y, subunit B1