PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28199_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 202aa    MW: 23574.8 Da    PI: 8.6941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28199_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.13.6e-19161644128
          NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk...sgyWkatgkdke 91 
                  G++F+P d el++eyL +k+egk+  +   i+  d+y+ ePw L++ + +  +++ewy+F++r + ++     gk+++r +t+   sg Wka  k  +
  RrC28199_p1  16 GIQFQPYDYELINEYLIPKLEGKPRGE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYFVTRTQLSKkkigCGKKAKRkITRdndSGSWKANAK-GD 109
                  99**********************655...9999**********86444444889*****999776553344566777744446669****9987.67 PP

          NAM  92 vlsk.kgelvglkktLvfy......kgrapkge...........ktdWvmheyrl 128
                  +++k  + ++g  +tL+f       k+++++g            + +W+m ey l
  RrC28199_p1 110 IKDKeAKMVIGEHQTLAFVksevnnKKKQKSGDgtscdvvvpgsENSWIMTEYML 164
                  777646778**********665554222222223344444444477888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-216180IPR003441NAC domain
PROSITE profilePS5100523.21513182IPR003441NAC domain
PfamPF023653.4E-1416163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MYEYNDMYEY NDEDGGIQFQ PYDYELINEY LIPKLEGKPR GEITMKDVYS KEPWLLDHPM  60
GSFFKKNEWY YFVTRTQLSK KKIGCGKKAK RKITRDNDSG SWKANAKGDI KDKEAKMVIG  120
EHQTLAFVKS EVNNKKKQKS GDGTSCDVVV PGSENSWIMT EYMLPEIEDK FRELVICKIH  180
MIENSNKKKK DDRHVASTSS LR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453519.11e-145PREDICTED: uncharacterized protein LOC108824593
TrEMBLA0A0D3ECL51e-106A0A0D3ECL5_BRAOL; Uncharacterized protein
TrEMBLA0A397XK521e-106A0A397XK52_BRACM; Uncharacterized protein
STRINGBo9g135840.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.29e-13NAC domain containing protein 35