PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28245_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 240aa    MW: 26753.9 Da    PI: 4.1227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28245_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-159782794
                 ---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3 27 ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                 +++ + +kt +l+ + g +W+v ++   +   +++++++GW +Fvk+n+L +gDf++F ++g++ fe  +
  RrC28245_p1  9 ELPRHLPKTAILQGTGGCVWKVGMTLkqEEEEEEVYFEQGWPKFVKDNDLVDGDFMTFVYNGDNLFEVSI 78
                 44566899****************8844444455**************************9988885544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.099182IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-17284IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-5282IPR003340B3 DNA binding domain
CDDcd100176.79E-15279No hitNo description
Gene3DG3DSA:2.40.330.103.2E-16284IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-12476IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
LIPISYYDEL PRHLPKTAIL QGTGGCVWKV GMTLKQEEEE EEVYFEQGWP KFVKDNDLVD  60
GDFMTFVYNG DNLFEVSIYG LDGCKQARAV AEEEEEEEDS ICALSSDDTE EDTSAESEKA  120
NITVQRSNDK GKAKVGAVDD SDDEEEEDSV YSLNNIKDTA DTGSSSEFEM ANTILRSKNK  180
GKSKEEVIKE ESDGKEDSDH SLNSEDKETD TGSESKMAKN KDSEDTATHV KRKVTSPKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455367.11e-131PREDICTED: B3 domain-containing protein At4g34400-like
SwissprotQ9SZ054e-40Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLM4DPT91e-112M4DPT9_BRARP; Uncharacterized protein
STRINGBra018530.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.14e-34B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]