PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC282_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 325aa    MW: 37406 Da    PI: 9.4016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC282_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-17261011091
                HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
         B3  10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                 ++++ l++p  f++++ + k+++k+ +l++  s ++Wev++  ++++    +t+GW++F+ a++L+ gD+++Fk++g++ f+
  RrC282_p1  26 GFNTH-LTIPVAFFSKYIEAKNKPKKAKLRSeASDKTWEVTI--DGRR----FTRGWNDFATAHDLRIGDIIIFKHEGDMVFN 101
                55566.9**********77778999******5666*******..9998....9**********************99998884 PP
2B376.33.4e-24153246498
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                + +++++ k++ l lp + a+++ ++k+++ ++++ +++g+sW+v l++r +sg y++++GW++F+++n+Lk+gD ++F l+g+ ++++++ v+ 
  RrC282_p1 153 AQVTASNIKLDTLDLPIEAASSNALNKRCH-EMIVVNKDGNSWTVSLRFRESSGIYYIRGGWRRFCRDNRLKVGDPMMFNLVGDGKTSPMICVCP 246
                45689999******************9887.9999*************************************************9999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2113110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2014114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.32316108IPR003340B3 DNA binding domain
CDDcd100176.74E-1617105No hitNo description
SMARTSM010193.2E-2219108IPR003340B3 DNA binding domain
PfamPF023628.8E-1228100IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-21149242IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.367150248IPR003340B3 DNA binding domain
CDDcd100173.69E-21150246No hitNo description
Gene3DG3DSA:2.40.330.103.4E-20150238IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-25151248IPR003340B3 DNA binding domain
PfamPF023629.4E-23152246IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-5273322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-5275323IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNCMKMANPP LQSPTNPHFF QPLLPGFNTH LTIPVAFFSK YIEAKNKPKK AKLRSEASDK  60
TWEVTIDGRR FTRGWNDFAT AHDLRIGDII IFKHEGDMVF NITPFGPSCC EIQYAQSHFI  120
KEEEKDNNDH ENENLKPETE PKSCFSFDYC FVAQVTASNI KLDTLDLPIE AASSNALNKR  180
CHEMIVVNKD GNSWTVSLRF RESSGIYYIR GGWRRFCRDN RLKVGDPMMF NLVGDGKTSP  240
MICVCPEEEC SELMSKYMRA NKKTKRRPTW VASSSSRENR FVTISLTRYN FRTSKLILPA  300
TFMKINSINK KSEIVLMDKH GVKRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716609.10.0B3 domain-containing protein REM7-like
RefseqXP_013716702.10.0B3 domain-containing protein REM7-like
RefseqXP_013719582.10.0B3 domain-containing protein REM7-like
TrEMBLA0A3P6A3W00.0A0A3P6A3W0_BRACM; Uncharacterized protein
STRINGBra023988.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-83B3 family protein