PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28408_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 164aa    MW: 18282.4 Da    PI: 5.5235
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28408_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.13.4e-3971071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp+++r+da++++ yeA+ r++dP+yG+v+ i++lqqq+ +l+a++ ll
  RrC28408_p1   7 PCGACKFLRRKCVEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISHLPDHDRDDAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVSLQAQVFLL 104
                  7***********************9979******************************************************************9888 PP

       DUF260  98 kee 100
                  +ee
  RrC28408_p1 105 REE 107
                  765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7636108IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-367103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGGLGSPCGA CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD  60
RDDAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VFLLREEASR KSTQGDCSEQ  120
GKFLAQDTPQ DLHSWFHQVV SDSSLNQMSD FASTSMDRDE SLLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3931017104LOB family transfactor Ramosa2.1
5ly0_B3e-3931017104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738501e-128AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482384.11e-115PREDICTED: LOB domain-containing protein 14-like
SwissprotQ9SJW57e-88LBD14_ARATH; LOB domain-containing protein 14
TrEMBLA0A3P6CG531e-107A0A3P6CG53_BRACM; Uncharacterized protein (Fragment)
STRINGBra021737.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.13e-73LOB domain-containing protein 14
Publications ? help Back to Top
  1. Jeon E, et al.
    LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
    Plant Cell Physiol., 2017. 58(12): p. 2190-2201
    [PMID:29040694]