PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28432_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 285aa    MW: 32541.7 Da    PI: 6.5195
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28432_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.31.7e-1222631050
                 HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
       SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                 + ++  R +++lKKA+ELS LC+++v++i +  +g+l  +++
  RrC28432_p1 22 SSSYKARAATVLKKAFELSELCGIDVCLIWYDREGNLvMTWP 63
                 568999**************************9998725776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0018464IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-1222100IPR002100Transcription factor, MADS-box
PfamPF003191.3E-72458IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.6762458IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTTMTKKKLS VRKDRVFKKP SSSSYKARAA TVLKKAFELS ELCGIDVCLI WYDREGNLVM  60
TWPEKEEGKV KDMAERYSML SEQERNKKSN NLSGFLNKKM IRDKKESLSK RDYKFFQQVS  120
ELEDSLQSRL QTLQESLLLD ISSNDSTLIN AYHHQASSLL NYPSSSTESC VDDVSTTTTS  180
MNHPQSKFSI LLYNHDDGTF TQLANSSARP SFEQEPQIPC DQDYGYLDLL LGEQGMRGCN  240
NFDLLPTTSS TILPSLMQTQ TPNFQQFMQT QQAYDQIPSF GRMLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444867.10.0PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A3P6BZS01e-137A0A3P6BZS0_BRACM; Uncharacterized protein
TrEMBLM4CIN71e-137M4CIN7_BRARP; Uncharacterized protein
STRINGBra004071.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.17e-43AGAMOUS-like 53