PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28592_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family S1Fa-like
Protein Properties Length: 70aa    MW: 7773.53 Da    PI: 11.1637
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28592_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA141.51.6e-44270270
         S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                 +++k+e+kGlnPGlivllv+gglll flvgn+ily+yaqknlPPrkkkPvskkk+k+e+lkqGv vPGe
  RrC28592_p1  2 KQGKIESKGLNPGLIVLLVIGGLLLAFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEQLKQGVRVPGE 70
                 5789****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.2E-39670IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MKQGKIESKG LNPGLIVLLV IGGLLLAFLV GNFILYTYAQ KNLPPRKKKP VSKKKMKKEQ  60
LKQGVRVPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.26e-24DNA-binding protein S1FA
RefseqXP_024026346.16e-24DNA-binding protein S1FA
SwissprotQ423378e-17S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLW9SCA31e-22W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.12e-23(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09735.14e-06S1FA-like DNA-binding protein