PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2888_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 379aa    MW: 41721.8 Da    PI: 9.0771
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2888_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.76.5e-1819107271
    trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                 Wt +e+++Liea++ ++er  r++                    ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++ 
  RrC2888_p2  19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMREYKKVREYERRT 107
                 **************666666665445556666666666777669999**************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7951194IPR017877Myb-like domain
PfamPF138375.3E-1318108No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MADHSGGLGL TREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMREYKKV REYERRTVES SFASGSSSSA  120
AVETESYWKM EKSERKERNL PSNMLPQTYQ ALFDVVESKT HPPSTAATAV TAAAIGSGNG  180
SGGGLHIPKV IQQQGLGFVP KHQMIQPPVL LPLPRPPPPS QPLQPQPLLL PPPPQPSFHA  240
QPIPPTVDSD TSEHSDTSPA KRRRTMPTTA AGTGAGSGGG NAEMEEGETI VAAALSKSAS  300
VIANAIRESE ERQDRRHKEV LSLQERRLKM EESNVEMNRE GMSGLVEAIN KLASSMFALA  360
SSSSSSTSRH NNQHQGGPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894440.0AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489666.10.0PREDICTED: trihelix transcription factor ASR3-like isoform X1
TrEMBLA0A0D3D5M20.0A0A0D3D5M2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELZ10.0A0A3P6ELZ1_BRAOL; Uncharacterized protein
STRINGBo7g041030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-107Trihelix family protein