PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2893_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 169aa    MW: 18291 Da    PI: 9.5085
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2893_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-0590112123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+Cg  F+    L  H+r+H
  RrC2893_p2  90 HTCPICGLEFPMGQALGGHMRKH 112
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.29E-837112No hitNo description
PfamPF139123.4E-113863IPR007087Zinc finger, C2H2
SMARTSM003550.963961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1823961IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.78390117IPR007087Zinc finger, C2H2
SMARTSM003550.03490112IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-1190115IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVASDKNLDQ TVEDTEATCL MLLSRVGESG GERGETRVFR CKTCMKEFSS FQALGGHRAS  60
HKKPVNNSSD GQSSPLSSGS VTKKTKKPSH TCPICGLEFP MGQALGGHMR KHRSEKESGA  120
LVTRSFLPEA TFTTLKKASS GKRVACFGMG MDPMDCVINL KLELGRTIF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489229.11e-102PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX858e-68ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLM4DSI41e-97M4DSI4_BRARP; Uncharacterized protein
STRINGBra019477.1-P2e-98(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.12e-60C2H2 family protein