PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2893_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 171aa    MW: 18608.2 Da    PI: 8.5034
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2893_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002690112123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F+    L  H+r+H
  RrC2893_p3  90 HRCSICGLEFPMGQALGGHMRKH 112
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.94E-738112No hitNo description
PfamPF139121.9E-93964IPR007087Zinc finger, C2H2
SMARTSM003550.144062IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.644062IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PROSITE profilePS501579.34990117IPR007087Zinc finger, C2H2
SMARTSM003550.05890112IPR015880Zinc finger, C2H2-like
PfamPF139126.1E-1190113IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MVARSESLDR TVEDTATNCL MLLSRVGECG GGDASESRVF RCKTCMKEFS SFQALRGHRV  60
SHKKPVNSSG GEGQSGIVFK KKTEKTGWEH RCSICGLEFP MGQALGGHMR KHWNKEDSGG  120
ALVTRSLFPE AAMTGTLKET SEEGKGVACL ESGSDWVNGV NLKLQLGRTM Y
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490042.11e-110PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX852e-58ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A3P5YHF71e-91A0A3P5YHF7_BRACM; Uncharacterized protein
STRINGBra019476.1-P1e-90(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.19e-61C2H2 family protein