PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28988_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 44aa    MW: 5227.79 Da    PI: 4.6098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28988_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.8e-091442129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g WT+e+d++lv +++++G  +W++ ++
      RrC28988_p1 14 KGEWTAEDDQKLVAYINEHGLCDWRSLPE 42
                     799**********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-7943IPR009057Homeodomain-like
PROSITE profilePS5129410.339944IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-91343IPR009057Homeodomain-like
PfamPF002492.7E-71443IPR001005SANT/Myb domain
CDDcd001671.07E-41643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 44 aa     Download sequence    Send to blast
MGRKTWFDDD GMRKGEWTAE DDQKLVAYIN EHGLCDWRSL PERA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747532e-55KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149358.18e-24PREDICTED: myb-related protein Zm38-like
RefseqXP_013584516.15e-24PREDICTED: transcription factor MYB34-like
RefseqXP_013641842.16e-24transcription factor MYB106-like
RefseqXP_013723284.13e-25transcription factor MYB106-like
TrEMBLA0A0D3CBB11e-22A0A0D3CBB1_BRAOL; Uncharacterized protein
TrEMBLA0A0N6Z0R71e-22A0A0N6Z0R7_BRANA; MYB transcription factor 47
TrEMBLA0A3P6EEK51e-22A0A3P6EEK5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F6A32e-23A0A3P6F6A3_BRAOL; Uncharacterized protein (Fragment)
STRINGBo5g025730.12e-23(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.12e-23myb domain protein 47