PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC29129_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 339aa    MW: 38543.1 Da    PI: 7.6478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC29129_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.68.4e-52211472128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                   pGfrFhPtdeelv++yLk+kv +k+l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++++s  +++
  RrC29129_p1  21 LPGFRFHPTDEELVSFYLKRKVLHKSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLdSTR 117
                  69**************************9.89***************8778899**************************************985667 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   +glkk+Lvfy+gra kg ktdW+mhe+rl
  RrC29129_p1 118 CIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 147
                  7***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-5819190IPR003441NAC domain
PROSITE profilePS5100556.00220190IPR003441NAC domain
PfamPF023652.4E-2522147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVLVMDDEES NTVERLDDVV LPGFRFHPTD EELVSFYLKR KVLHKSLPFE LIKKVDIYKY  60
DPWDLPKLAA MGEKEWYFYC PRDRKYRNST RPNRVTGGGF WKATGTDRPI YSLDSTRCIG  120
LKKSLVFYRG RAAKGIKTDW MMHEFRLPSL SDSHHSSSYP SYDNKKQHHN INNKEIPSSD  180
AWAICRIFKK TNSVSSQRSV PQSWLYPAIP DTSQYNSLSQ TTTLFTSTDV FSNMATRQNL  240
ISSPVDEPAS FTESAAAYFA SQMLGVPYNI ARNNGTGDTI FLRNSETGNA LFPSNNDDNY  300
FHNLAGGLTN ELPNVRSMVE TGFETTTSEM SATSYSPNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-532219317171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-113AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-113CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankHG9686031e-113HG968603.1 Arabidopsis thaliana T-DNA flanking sequence, clone GK-027D08-028756.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460200.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9FIW50.0NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A078FF980.0A0A078FF98_BRANA; BnaC06g12700D protein
TrEMBLA0A0D3CT030.0A0A0D3CT03_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FTM90.0A0A3P6FTM9_BRAOL; Uncharacterized protein
STRINGBo6g064260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.10.0NAC domain containing protein 94