PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC293_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 243aa    MW: 26897.3 Da    PI: 7.5756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC293_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-2091141255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp   + k  r +lg+++ta eAa+a+++a+ +l+g
  RrC293_p3  91 HYRGVRRRP-WGKYAAEIRDP---NkKGSRLWLGTYDTAVEAARAYDQAAFELRG 141
                7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3290150IPR001471AP2/ERF domain
PROSITE profilePS5103224.94891149IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2391151IPR016177DNA-binding domain
SMARTSM003801.1E-3791155IPR001471AP2/ERF domain
PfamPF008473.0E-1491141IPR001471AP2/ERF domain
CDDcd000182.02E-3091149No hitNo description
PRINTSPR003673.0E-1392103IPR001471AP2/ERF domain
PRINTSPR003673.0E-13131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MATTQEALAI ELISQHLLTD VASMETKVSN ITFHDADSSL VPSQDHDRSP RTTLKPNSTL  60
NRRKPPLPNI SVPRTVSCTI KKAGEEEETR HYRGVRRRPW GKYAAEIRDP NKKGSRLWLG  120
TYDTAVEAAR AYDQAAFELR GRKAILNFPL EVRATSDSCF VGLGKRKRLK SFPAVDEEEE  180
EKAVPVRVKD EEKERETTVA EVEAVPLTPS SWMGVWDVGG AGDGIFSVPP LTPTSPNSVV  240
SVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-27921561579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461289.11e-172PREDICTED: ethylene-responsive transcription factor ERF104-like
SwissprotQ9FKG13e-97EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLV4KKN71e-117V4KKN7_EUTSA; Uncharacterized protein
STRINGXP_006394488.11e-117(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.14e-96ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]