PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2941_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 427aa MW: 48067.9 Da PI: 5.7115

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2941_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	83	3.2e-26	97	151	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ eLH++Fv+av+q+G +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl RrC2941_p3 97 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 151 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50110	13.477	1	29	IPR001789	Signal transduction response regulator, receiver domain
SuperFamily	SSF52172	6.94E-5	2	34	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	3.7E-7	2	36	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.1E-28	94	156	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-16	95	155	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-22	97	151	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-7	99	150	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MKGVQHGACD YLLKPIRMKE LKIIWQHVLR KKLQEVKDNE GCYDGGANWF TGNDETHYLG 60 GGEDVSFGKK RKEFDFDKKL LLQDESDPSS SSSSSKKARV VWSFELHQKF VNAVNQIGCD 120 HKAGPKKILD LMNVPWLTRE NVASHLQKYR LYLSRLEKGK ELKCYSGGVK NMDSPPKDSE 180 FSSGHQSPGK NSYAFSGGSS LIHKAESDPK QLSASSVSDP SSDVHMPPPK AKKTRIEFDP 240 PISSSCAFDS LLPWEDVPDP LESKPQILYQ SSFLQQQPLL PSQSPFVMEK DMKPSYETCV 300 NADEFLIPQD KNSTVILQDL HLCAPPPSAM KLQESSSNVT NDTESILRSL NWELPESNHS 360 GFIDTDLDFS WLHNEHFLAN TSGNFQNFQF QDYSCSPSLL SELPPHLWFG NDPDEYTLTV 420 DHGLFIS

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MKGVQHGACD YLLKPIRMKE LKIIWQHVLR KKLQEVKDNE GCYDGGANWF TGNDETHYLG  60
GGEDVSFGKK RKEFDFDKKL LLQDESDPSS SSSSSKKARV VWSFELHQKF VNAVNQIGCD  120
HKAGPKKILD LMNVPWLTRE NVASHLQKYR LYLSRLEKGK ELKCYSGGVK NMDSPPKDSE  180
FSSGHQSPGK NSYAFSGGSS LIHKAESDPK QLSASSVSDP SSDVHMPPPK AKKTRIEFDP  240
PISSSCAFDS LLPWEDVPDP LESKPQILYQ SSFLQQQPLL PSQSPFVMEK DMKPSYETCV  300
NADEFLIPQD KNSTVILQDL HLCAPPPSAM KLQESSSNVT NDTESILRSL NWELPESNHS  360
GFIDTDLDFS WLHNEHFLAN TSGNFQNFQF QDYSCSPSLL SELPPHLWFG NDPDEYTLTV  420
DHGLFIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	1e-17	93	156	1	63	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12610214}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018446001.1	0.0	PREDICTED: two-component response regulator ARR11
Swissprot	Q9FXD6	0.0	ARR11_ARATH; Two-component response regulator ARR11
TrEMBL	M4CJ61	0.0	M4CJ61_BRARP; Two-component response regulator
STRING	Bra004245.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8066	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	0.0	response regulator 11

Publications ? help Back to Top
Zwack PJ, et al. Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress. Plant Physiol., 2016. 172(2): p. 1249-1258 [PMID:27550996] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846]