PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2943_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 364aa    MW: 40651.6 Da    PI: 8.0148
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2943_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.8e-112147127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C+++ rtG C++G++C+F+H++
  RrC2943_p1 21 PGEPDCSYYIRTGLCRFGSTCRFNHPR 47
                5789*********************96 PP
2zf-CCCH37.73.4e-126892327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                +++C ++++tGtCk+G +CkF+H++
  RrC2943_p1 68 QPECEYYLKTGTCKFGVTCKFHHPR 92
                799********************96 PP
3zf-CCCH382.7e-12114138327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C +f+rtG+Ck+G++CkF+H++
  RrC2943_p1 114 EVDCAYFLRTGHCKFGATCKFNHPQ 138
                 578********************97 PP
4zf-CCCH37.34.7e-12243269127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f+++tG Ck+G  CkF+H++
  RrC2943_p1 243 PGQPECQFYMKTGDCKFGTVCKFHHPR 269
                 5789*********************96 PP
5zf-CCCH375.6e-12289315127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C f++r+G+Ck+G++CkF+H++
  RrC2943_p1 289 PGEPVCVFYSRYGICKFGPSCKFNHPM 315
                 57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6992048IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-52047IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-82247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-62548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-42647IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1086593IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-56592IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-96892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-47192IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99111139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6114140IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4117137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22242270IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5242269IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8244269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6246271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4248270IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633288316IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9290315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5292315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4293313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MWQMNLSSDE TMETGSYPER PGEPDCSYYI RTGLCRFGST CRFNHPRDRE LVITTARMRG  60
EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGR VSLNMLGYPL RSNEVDCAYF  120
LRTGHCKFGA TCKFNHPQPQ PTTTNLMVPA PTSGQQQSYP WSRASFIASP RWQDPSGFTP  180
LLMPQGVVPV QGWNPYTGQL GSPSGTGNDH NSYRNMQQNE SGSSVQLGGI YALPRESVFP  240
ERPGQPECQF YMKTGDCKFG TVCKFHHPRD RQAPPPDCLL SPIGLPLRPG EPVCVFYSRY  300
GICKFGPSCK FNHPMGVFTY DNTASETDEV VETSGGHSRR VSVSETRQAT ITTGQDTTTD  360
TQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179780.0AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440407.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A397ZJV60.0A0A397ZJV6_BRACM; Uncharacterized protein
STRINGBra040604.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]