PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC29477_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ZF-HD

Protein Properties

Length: 154aa MW: 16679.8 Da PI: 8.253

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC29477_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	107.2	9.9e-34	46	102	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa+lG+ha+DGCgE+mps+++ +++++l+CaACgCHRnFHRre+++ RrC29477_p1 46 FTYKECLKNHAAALGSHALDGCGEYMPSPSSVsTDPTSLQCAACGCHRNFHRREPDK 102 68************************9998899*****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01566	4.3E-31	47	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.1E-27	47	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.206	48	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-16	48	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MTTHTTITPP PKSPEPEPET PTRIQPAKPL SFSNGVIKRH HPPLLFTYKE CLKNHAAALG 60 SHALDGCGEY MPSPSSVSTD PTSLQCAACG CHRNFHRREP DKDSSIPPPP SSVAATVEYQ 120 PHHRHHPPPP PQLAPLPRSP NSSSPPPISS SYML

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269\|PubMed:17387478}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellic acid (GA). {ECO:0000269\|PubMed:17387478}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353432	1e-119	AK353432.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-43-G18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006405598.1	2e-62	zinc-finger homeodomain protein 10
Swissprot	Q9FIW9	3e-48	ZHD10_ARATH; Zinc-finger homeodomain protein 10
TrEMBL	E4MY35	5e-61	E4MY35_EUTHA; mRNA, clone: RTFL01-43-G18
TrEMBL	V4NL04	5e-61	V4NL04_EUTSA; Uncharacterized protein
STRING	XP_006405598.1	8e-62	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	4e-37	homeobox protein 23

Publications ? help Back to Top
Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology. Plant Signal Behav, 2014. 9(3): p. e28211 [PMID:24614501] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Kazama D, et al. Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis. Plants (Basel), 2013. 2(4): p. 769-85 [PMID:27137403]