PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2980_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 646aa    MW: 70856.7 Da    PI: 6.2465
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2980_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-06354398442
    zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   C+ +e  e+   C  ++  lC  C +++H        H++vpl
  RrC2980_p1 354 IQCNVCEAAEAAVLCCADEAALCWGCDEKIHAAnklaekHQRVPL 398
                 68******99*********************66899999999986 PP
2zf-B_box22.72.1e-07404437235
    zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 
                 + +kC+ ++e    +fC +++  lC++C +++H 
  RrC2980_p1 404 SVPKCDICQEASGFFFCLQDRAILCRKCDVAIHT 437
                 5689*******9********************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.103302.3E-2174204IPR017438Inorganic polyphosphate/ATP-NAD kinase, domain 1
SuperFamilySSF1113311.57E-3288332IPR016064NAD kinase/diacylglycerol kinase-like domain
PfamPF015131.5E-891134IPR002504NAD kinase
Gene3DG3DSA:2.60.200.304.3E-24205325IPR017437ATP-NAD kinase, PpnK-type, all-beta
PROSITE profilePS5011910.495351398IPR000315B-box-type zinc finger
SMARTSM003364.8E-11351398IPR000315B-box-type zinc finger
CDDcd000212.03E-6354398No hitNo description
PROSITE profilePS501198.688403450IPR000315B-box-type zinc finger
SMARTSM003365.9E-14403450IPR000315B-box-type zinc finger
PfamPF006431.6E-5405440IPR000315B-box-type zinc finger
CDDcd000214.74E-8406450No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006741Biological ProcessNADP biosynthetic process
GO:0019674Biological ProcessNAD metabolic process
GO:0005622Cellular Componentintracellular
GO:0003951Molecular FunctionNAD+ kinase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MNQRVSGGCH LHSSDSGDKE IHQQRERMAI RKLLLLLKPI DLYPFLETDG VSLIKNHQVL  60
QYLESRCKVH RDAINFCQEI LNKKPVEWKP ISRNDLSHPI RDDVDMVITV GGDGTLLHAS  120
HFIDDSVPVL GVNSDPTQAH EVEELSDQFD ASRSTGHLCA ATVENFEQVL DDILLGRVVP  180
SRVSRISVKL NSESLLSHAL NDILIAHPCP AAVSKFSFKI KKNNGDASPK TLNCRSSGLR  240
VCTAAGSTAA MLSAGGFVMP MLSPDLQFMV REPISLGSTL AQMHSDFKPG QTLDVNWYSD  300
HGTIYIDGCQ VNYNVQLGDT IEISSDAPVL NVFLSQGFTR IRSNLSQQRW SPAIQCNVCE  360
AAEAAVLCCA DEAALCWGCD EKIHAANKLA EKHQRVPLSV SSSSVPKCDI CQEASGFFFC  420
LQDRAILCRK CDVAIHTVNP HVSAHQRFLL TGIRVGLEAI DTGPSVKSSS PPAANDDKAM  480
ETKQFTLPTS EPQKMDFDHD HHQKKMVLPE TKVSDHISTK LPFASSGSAT GQWQLEEIFG  540
LTDFDQSYEY MENNGSSKAD TSGRGDSDSS SMMRSGEEDG EDNNNCLGGE TSCAVPQIHS  600
PPTASGLNWP KHFDHNSVFV PDISSSTPCT GSSPNQRVGK RRRRRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1639644KRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7HE670.0A0A3Q7HE67_SOLLC; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-135light-regulated zinc finger protein 1