PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC29_p9

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 246aa MW: 28020.8 Da PI: 7.8572

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC29_p9	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107	3e-33	61	180	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsssg......kaa 91 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak ++el+ ++++++s+ ++++ns+++ ++ RrC29_p9 61 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQVYDLQDRLGLSQPSKVIDWLLEAAKDDVDELPPLQFPQESFDldkgkwV-----KQDENSNQDhgfntsQQH 156 78*************************************************************999996666443332.....333322222345453444 PP TCP 92 ksaakskksqksaasalnlakesr 115 s ++ +++++a+s nl + ++ RrC29_p9 157 FSLTNLYNNNNNASSYYNLGHVQH 180 444488888888888888887554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	30.424	62	120	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.9E-29	62	165	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MRSREFDEEE TQAKQERDHN HQLNLNNMLQ QQNQPSSAPT SRQWTSAFRN PRIVRVSRTF 60 GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS QPSKVIDWLL EAAKDDVDEL 120 PPLQFPQESF DLDKGKWVKQ DENSNQDHGF NTSQQHFSLT NLYNNNNNAS SYYNLGHVQH 180 SLDQPGNNVT VAISNVPYNN NLNLPPPPTM SSLFPTYPSF LGASHHVVDG AGNLQLFSSN 240 ANRNNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-18	67	121	1	55	Putative transcription factor PCF6
5zkt_B	2e-18	67	121	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437652.1	1e-146	PREDICTED: transcription factor TCP5-like
Swissprot	Q9FME3	1e-107	TCP5_ARATH; Transcription factor TCP5
TrEMBL	A0A291I313	1e-138	A0A291I313_BRARR; TCP17
STRING	Bra029344.1-P	1e-139	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	8e-89	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]