PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3031_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 196aa MW: 22805 Da PI: 5.7044

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3031_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.8	2.4e-13	86	136	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +++rr+++NRe+ArrsR RK+ ++eL v L + N+ L+++l++ ++ RrC3031_p4 86 RKQRRMISNRESARRSRMRKQRHLDELWSQVIRLRTDNHCLIDKLNRVSES 136 79*******************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.1E-14	82	146	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.8E-11	84	136	No hit	No description
PROSITE profile	PS50217	10.117	84	136	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.44E-12	86	136	No hit	No description
Pfam	PF00170	3.7E-11	86	139	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.72E-18	87	138	No hit	No description
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MNTIPAELTG YFQYVSPEIY NNQTPSMDSQ YFNMPLSPTS SSSYYINGLM SNNNYYSSSS 60 NVQDLTTSNN STSDDDHQQS VAIDERKQRR MISNRESARR SRMRKQRHLD ELWSQVIRLR 120 TDNHCLIDKL NRVSESHQLA LKENAKLKEE TSNLRQLISE IKSNNEENNN FLRELEDSIS 180 NSRSDSNLMG RDFELC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	105	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC027134	0.0	AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence.
GenBank	AF332430	0.0	AF332430.1 Arabidopsis thaliana clone C00105 (e) putative bZIP transcription factor (At1g13600) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F21F23	0.0	AC027656.4 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018484771.1	1e-141	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	1e-31	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A078I5Z1	1e-115	A0A078I5Z1_BRANA; BnaC01g30400D protein
STRING	Bo5g017580.1	1e-115	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2892	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	1e-108	basic leucine-zipper 58

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]