PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3054_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 256aa    MW: 29134.8 Da    PI: 6.9043
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3054_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.5e-5071311128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lp GfrFhPtdeelv++yL+++++++++++  vi+e+d+yk++Pw+Lp+++  +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg dk++ +   ++
  RrC3054_p2   7 LPEGFRFHPTDEELVKFYLCRRCASEPISA-PVIAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRSAGTGYWKATGADKPIGK--PKT 102
                 699*************************99.89***************7666789*************************************98..778 PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  g+kk Lvfy g+ap+g+kt+W+mheyrl
  RrC3054_p2 103 LGIKKALVFYAGKAPRGVKTNWIMHEYRL 131
                 ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-603160IPR003441NAC domain
PROSITE profilePS5100558.817160IPR003441NAC domain
PfamPF023653.6E-268131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKAELNLPEG FRFHPTDEEL VKFYLCRRCA SEPISAPVIA EIDLYKFNPW ELPEMALYGE  60
KEWYFFSHRD RKYPNGSRPN RSAGTGYWKA TGADKPIGKP KTLGIKKALV FYAGKAPRGV  120
KTNWIMHEYR LANVDRSASS SNKKNSLRLD DWVLCRIYNK KGTMEKCYPA DEVTTTSTSE  180
SKCSSHVVSP GVTCSDNVES KWVDDLEDAF VFGSIESLRN DAFVPRFPYQ SDDFAASFED  240
PPEQKPFSDW SFATQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-81216610174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2458790.0AY245879.1 Brassica napus NAC-domain protein 1-1 (NAC1-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491032.10.0PREDICTED: NAC domain-containing protein 102 isoform X2
SwissprotQ8H1151e-152NA102_ARATH; NAC domain-containing protein 102
TrEMBLA0A3P6BC281e-161A0A3P6BC28_BRAOL; Uncharacterized protein
STRINGXP_006394242.11e-160(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.11e-142NAC domain containing protein 102
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]