PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3082_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 213aa MW: 24734 Da PI: 9.9377

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3082_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.8	2.2e-49	14	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelvv+yL +kv+g +l++ vi+e+di+k+ePwdLp + ++e yfFs+r+ ky++g+r+nr+t sgyWkatg d ++ + ++ RrC3082_p3 14 LPPGFRFHPTDEELVVQYLSRKVSGLPLPA-YVIPEIDICKTEPWDLPG---GCDSERYFFSTREAKYPNGNRSNRSTGSGYWKATGIDGQIGK---NV 105 79*************************9.89***********4...45789*******************************77...89 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfykg+ p+g++t+Wv+heyrl RrC3082_p3 106 LGMKKTLVFYKGKPPNGTRTNWVLHEYRL 134 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-57	7	156	IPR003441	NAC domain
PROSITE profile	PS51005	55.624	14	156	IPR003441	NAC domain
Pfam	PF02365	3.2E-26	15	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MEKRSSIKNR KMRLPPGFRF HPTDEELVVQ YLSRKVSGLP LPAYVIPEID ICKTEPWDLP 60 GGCDSERYFF STREAKYPNG NRSNRSTGSG YWKATGIDGQ IGKNVLGMKK TLVFYKGKPP 120 NGTRTNWVLH EYRLVDSQHG SYGENTNWVL CRVFLKKRSN NNSKKKENER EEQKKEERER 180 DDNKSTCPIF YDFLGNDVKN RRCCDLNLTR VVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-51	11	159	17	171	NAC domain-containing protein 19
3swm_B	9e-51	11	159	17	171	NAC domain-containing protein 19
3swm_C	9e-51	11	159	17	171	NAC domain-containing protein 19
3swm_D	9e-51	11	159	17	171	NAC domain-containing protein 19
3swp_A	9e-51	11	159	17	171	NAC domain-containing protein 19
3swp_B	9e-51	11	159	17	171	NAC domain-containing protein 19
3swp_C	9e-51	11	159	17	171	NAC domain-containing protein 19
3swp_D	9e-51	11	159	17	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM975668	0.0	KM975668.1 Brassica napus NAC transcription factor 41.1 (NAC41.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437718.1	1e-155	PREDICTED: NAC domain-containing protein 41-like
Swissprot	O22798	1e-105	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	A0A3N6R1Y6	1e-120	A0A3N6R1Y6_BRACR; Uncharacterized protein
STRING	Bo4g181990.1	1e-121	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	1e-100	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]