PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3123_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CAMTA

Protein Properties

Length: 262aa MW: 30144.7 Da PI: 7.2064

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3123_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	173.6	2.8e-54	11	127	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 ++e ++rwlk+ e++ iL n+e++++t +++++p+sgsl+Lyn+++++++rkDG++wkkkkdg+++ E+he+LKvg+ve+l+cyY h+e++p+fqrr+y RrC3123_p2 11 YQEgQTRWLKPPEVHFILLNHERYQITDKPPHKPSSGSLFLYNKRVLKFYRKDGHQWKKKKDGRAIAEAHERLKVGNVEALQCYYGHGEHEPSFQRRIY 109 56779******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylev 117 w+L+ e+e+i lvhy++v RrC3123_p2 110 WILDPEYEHIALVHYRDV 127 **************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	72.828	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.2E-70	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-45	15	127	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MQSQYEVTTL YQEGQTRWLK PPEVHFILLN HERYQITDKP PHKPSSGSLF LYNKRVLKFY 60 RKDGHQWKKK KDGRAIAEAH ERLKVGNVEA LQCYYGHGEH EPSFQRRIYW ILDPEYEHIA 120 LVHYRDVSDV KEVKQTGGTV LQFSLNPSTL FSSPGYSNHC IGVSSDIRHQ QHSSTSAAGS 180 NVEVNSNSNG GVETRKGSGR SSYEWEALKR LEEQLSLGDD DNIVQNESLD SLQFLDIEHL 240 MSTISRIYTY LILFIVSTRV NV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445567.1	1e-163	PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
Swissprot	Q9FYG2	6e-86	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	M4CJ33	1e-123	M4CJ33_BRARP; Uncharacterized protein
STRING	Bra004217.1-P	1e-124	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33759	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	2e-84	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]